Research News
View Page | Edit Page | Details



 Microbiome data analysis with Galaxy


Dear Researchers,
The Core Facility Computational Bioanalytics is happy to offer you Galaxy Workflows for Microbiome data analysis.

Please, feel free to visit Galaxy web server (http://pu02zmf001*) and try our workflows:

 Basic Workflow – gives you the possibility to pre-process your data, run QC check and make quality filtering

 Clustering to OTUs and Core Diversity Workflows – provide you solution for clustering the sequences into OTUs ending up with OTU table. This is folowing with alpha and beta diversity analysis. Depending on your dataset – 16s, 18s or ITS, you are able do analysis against GreenGenes, SILVA or UNITE databases, respectively.

 Picrust Workflow – If you are interested in functional analysis, you can use Picrust Workflow to predict your metagenomes and categorize them by functions.

 GraPhlAn visualization - This workflow produce high-quality circular representations of taxonomic and phylogenetic trees. It focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.



For those who are more interesting in bioinformatics, we are
organizing Bioinformatics Round Tables regularly.

Last one was on 2nd of June 2016. It was visited by 16
bioinformaticians from different institutes.

One of the topics was the new infrastructure which will be available in ZMF
in August 2016.

Our guest from Medical University of Innsbruck, Dipl.-Ing. Dr.techn.
Univ.-Prof. Zlatko Trajanoski shared his experiences in bioinformatics.

Next Bioinformatics Round Table is planned for September 2016.
You are welcome to attend it.

If you need any kind of support using Galaxy Workflows or analyzing
your data, feel free to contact us.

We will be happy to give you advice and assistance for your research.